Jun13-17
9:00 am - 4:30 pm CE
Instructors: Marc Chevrete, Nelly Sélem
Helpers: Andrés Arredondo, Shadday Flores
This is a pilot workshop, testing out a lesson that is still under development. The lesson authors would appreciate any feedback you can give them about the lesson content and suggestions for how it could be further improved.
Where: Callejón de Jalisco, Valenciana. Get directions with OpenStreetMap or Google Maps.
When: Jun13-17. Add to your Google Calendar.
Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below).
Accessibility: We are committed to making this workshop accessible to everybody. For workshops at a physical location, the workshop organizers have checked that:
Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them.
Contact: Please email first@example.org or second@example.org for more information.
Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.
Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.
We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.
Please be sure to complete these surveys before and after the workshop.
This workshop is teaching a lesson in The Carpentries Incubator.
| Before starting | Pre-workshop survey |
| 14:00 - 16:00 pm | Pangenomics in prokaryotes |
| 17:30 -19:00 | Genome Mining in prokaryotes |
| 14:00 - 15:00 | BGC families: BiG SCAPE |
| 15:00-16:00 | BGC families: CORASON |
| 17:30 -19:00 | Evolutionary Genome Mining |
| 17:30 -19:00 | Protein Families |
| Post-workshop survey |
| B1 Hoskisson | Natural Products and Genomics. Hoskisson |
| B2 Barona | Introduction to Genome Mining. |
| B3 Chevrette | Introduction to practical Genome Mining. |
| B5 Fernandez | Biosíntesis de Natural Products. |
| B6 Straight | NP Regulación y fisiología. |
| B9 Hoskisson | NP Descubrimiento, resistencia y producción. |
| B10 Chevrette | BGCs and Genome Mining |
| B12 Straight | NP Química y metabolómica |
| B13 Fernández-Hoskisson | Herramientas genéticas. |
| B16 Barona | NP y evolución. |
| B17 Straight | NP Ecología. |
| End |
The lesson taught in this workshop is being piloted and a precise schedule is yet to be established. The workshop will include regular breaks. Please contact the workshop organisers if you would like more information about the planned schedule.
To participate in a workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.
We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.
Please check the “Setup” page of the lesson site for instructions to follow to obtain the software and data you will need to follow the lesson.